TechRxiv
RGCOK.pdf (1.68 MB)

A Randomized Optimal k-mer Indexing Approach for Efficient Parallel Genome Sequence Compression

Download (1.68 MB)
preprint
posted on 2023-03-17, 20:11 authored by Subhankar RoySubhankar Roy, Anirban Mukhopadhyay

We evaluate the performance of RGCOK on eight benchmark human genomes and other benchmark data commonly used to assess the performance of various state-of-the-art algorithms for referential genome compression.

History

Email Address of Submitting Author

subhankar.roy07@gmail.com

ORCID of Submitting Author

0000-0002-6307-7043

Submitting Author's Institution

Academy of Technology

Submitting Author's Country

  • India

Usage metrics

    Categories

    Keywords

    next-Generation sequencing (NGS)Genome sequence formatsFASTAReference-basedHashingk-mer indexingOptimal k-mer sizeRandomization approach

    Licence

    CC BY 4.0

    Exports