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A Self-Attention Mechanism for COVID-19 Detection using Chest X-Ray Images

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posted on 13.09.2021, 03:08 authored by Usman Muhammad, Md Ziaul HoqueMd Ziaul Hoque, Mourad Oussalah, Anja Keskinarkaus, Tapio Seppänen, Pinaki Sarder

COVID-19 is a rapidly spreading viral disease and has affected over 100 countries worldwide. The numbers of casualties and infected cases have been escalated particularly in vulnerable states with weakened healthcare systems. Recently, reverse transcription-polymerase chain reaction (RT-PCR) is the test of choice for diagnosing COVID-19. However, current evidence suggests that COVID-19 infected patients are mostly stimulated from a lung infection after coming in contact with this virus. Therefore, chest X-ray (i.e., radiography) and chest CT can be a surrogate in some countries where PCR is not readily available. This has forced the scientific community to detect COVID-19 infection from X-ray images and recently proposed machine learning methods offer great promise for fast and accurate detection. Deep learning with convolutional neural networks (CNNs) has been successfully applied to radiological imaging for improving the accuracy of diagnosis. However, the performance remains limited due to the lack of representative X-ray images available in public benchmark datasets. To alleviate this issue, we propose an attention mechanism for data augmentation in the feature space rather than in the data space using reconstruction independent component analysis (RICA). Specifically, a unified architecture is proposed which contains a deep convolutional neural network (CNN), an attention mechanism, and a bidirectional LSTM (BiLSTM). The CNN provides the high-level features extracted at the pooling layer where the attention mechanism chooses the most relevant features and generates low-dimensional augmented features. Finally, BiLSTM is used to classify the processed sequential information. We conducted experiments on two publicly available databases to show that the proposed approach achieves the state-of-the-art results with an accuracy of 97% and 84% while being able to generate explanations. Explainability analysis has been carried out using feature visualization through PCA projection and t-SNE plots.


Academy of Finland Profi5 DigiHealth project (#326291)


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University of Oulu

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